Rootkit/tr crypt?

Click Start > Run and copy/paste the following bolded text into the Run box and click OK:

ComboFix /u



This will also reset your restore points.

How is the machine running now?

When I put in the command in Search, it says Combo-Fix.exe is unrecognizable.

Hello.

• Open HijackThis.
  
• When Hijack This opens, click "Open the Misc Tools section"
  
• Then select "Open Uninstall Manager"
  
• Click on "Save List..." (generates uninstall_list.txt)
  
• Click Save, copy and paste the results in your next post.
  

7-Zip 4.65
Adobe Flash Player 10 Plugin
Adobe Flash Player 9 ActiveX
Adobe Flash Player ActiveX
Adobe Reader 8.1.2
AIM 6
Apple Mobile Device Support
Apple Software Update
Avira AntiVir Premium
Bonjour
Camera Assistant Software for Toshiba
CCleaner (remove only)
CD/DVD Drive Acoustic Silencer
Counter-Strike
DVD MovieFactory for TOSHIBA
Google Desktop
HijackThis 2.0.2
Hotfix for Microsoft .NET Framework 3.5 SP1 (KB953595)
Hotfix for Microsoft .NET Framework 3.5 SP1 (KB958484)
Intel(R) Graphics Media Accelerator Driver
Intel Matrix Storage Manager
iTunes
Java(TM) 6 Update 6
LimeWire PRO 5.1.1
Microsoft .NET Framework 3.5 SP1
Microsoft .NET Framework 3.5 SP1
Microsoft Office PowerPoint Viewer 2007 (English)
Microsoft Office Suite Activation Assistant
Microsoft VC9 runtime libraries
Microsoft Visual C++ 2005 Redistributable
Microsoft Visual C++ 2008 Redistributable - x86 9.0.30729.17
Microsoft Works
Mozilla Firefox (3.5.2)
MSXML 4.0 SP2 (KB941833)
MSXML 4.0 SP2 (KB954430)
ooVoo
Pando Media Booster
QuickTime
Realtek 8169 8168 8101E 8102E Ethernet Driver
Realtek High Definition Audio Driver
REALTEK RTL8187B Wireless LAN Driver
Realtek USB 2.0 Card Reader
Realtek WiFi Protected Setup Library
Security Update for Windows Media Encoder (KB954156)
Steam
Synaptics Pointing Device Driver
TOSHIBA Assist
TOSHIBA Disc Creator
TOSHIBA DVD PLAYER
TOSHIBA Extended Tiles for Windows Mobility Center
TOSHIBA Face Recognition
TOSHIBA Face Recognition
TOSHIBA Hardware Setup
TOSHIBA Recovery Disc Creator
TOSHIBA Service Station
TOSHIBA Software Modem
TOSHIBA Speech System Applications
TOSHIBA Speech System SR Engine(U.S.) Version1.0
TOSHIBA Speech System TTS Engine(U.S.) Version1.0
TOSHIBA Supervisor Password
TOSHIBA Value Added Package
Update for Microsoft .NET Framework 3.5 SP1 (KB963707)
Windows Media Encoder 9 Series
Windows Media Encoder 9 Series

Hello.

I see that you are running Limewire.
P2P(Peer to peer) applications are designed to help you easily share and distribute files between you and a group of people. But they can also be used to distribute malware, and thus are not considered safe.
The removal of these programs is optional, but highly recommended.

• Click Start >> Control Panel.
  
• Under the Programs click Uninstall a Program
  
• Highlight the following:
  
  Adobe Reader 8.1.2
  Java(TM) 6 Update 6
  LimeWire PRO 5.1.1
  
  
• Click on the Uninstall/Change button at the top.
  

Anything close to Limewire that is safer?

Not really.
All P2P like Limewire or Frostwire or other P2P clients that involve file sharing are dangerous, who know if what you were downloading was infected, that's why P2P is one of the biggest sources for getting infected.

I am wondering why my CPU usage is so high on Vista can you explain?

You have a lot of junk running at startup.

Post a new Hijack This log and we'll stop some of the un-needed things and take some stress off the processor.